The EPD viewer for A. thaliana is made of the tracks given in the table below. The genome sequence track is provided by the EPD team (sequence was downloaded here). Note that when strand is n/a, it means that signal applies to both strands.
UCSC track name | Track description | Track resolution [bp] | Strand | Original dataset | Raw format | Tissue | Stage/Time point | Condition | MGA series name | PMID | |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | Nucleosomes | centered MNase-seq tagsa | 20 | n/a | GSM1216733 | SRA | n/a | seedling | n/a | li14 | 24606212 |
2 | GFP H3K4me3 | centered H3K4me3 ChIP-seqb | 20 | n/a | GSM2302418 | SRA | root | n/a | GFP | deLucas16 | 27650334 |
3 | All CAGE (+) | 5′ end of PEAT reads | 1 | + | megraw.cgr... | BAM | root | n/a | n/a | morton14 | 25035402 |
4 | All CAGE (-) | 5′ end of PEAT reads | 1 | − | megraw.cgr... | BAM | root | n/a | n/a | morton14 | 25035402 |
5 | EPDnew promoters | EPDnew promoters v. 004 | 1c | n/ad | n/a | n/a | n/a | n/a | n/a | epd | 23193273 |
6 | RefSeq genes | RefSeq gene annotation | 1 | n/a | arabidopsi... | GFF | n/a | n/a | n/a | n/a | 22121212 |
These tracks are available at UCSC as a public hub named "EPD Viewer Hub".