EPD viewer for G. gallus (Dec 2015 Gallus_gallus-5.0/galGal5), version 001

The EPD viewer for G. gallus is made of the tracks given in the table below. Note that when strand is n/a, it means that signal applies to both strands.

UCSC track name Track description Track resolution [bp] Strand Original dataset Raw format Tissue Stage/Time point Condition MGA series name PMID
1 H3K4me3 centered H3K4me3 ChIP-seq tagsa 25 n/a GSE86414 SRA primary remiges n/a n/ali17 28106042
2 All CAGE (+) 5′ end of CAGE reads 1 + FANTOM5 FASTQ all adult tissues merged n/a n/alizio17 28873399
3 All CAGE (-) 5′ end of CAGE reads 1 − FANTOM5 FASTQ all adult tissues merged n/a n/alizio17 28873399
4 EPDnew promoters EPDnew promoters v. 001 1b n/ac n/a n/a n/a n/a n/aepd 23193273
atags were centered by 70 bp (ends were shifted 70 bp downstream or upstream if on the + or − strand respectively)
bthe thick part represents the TSS plus the 10 bp downstream while the thin part represents the 49 bp upstream of the TSS
cpromoters on the + and − strands are combined in a single track, with promoter orientation defined by the position of the thick part relative to the thin part

These tracks are available at UCSC as a public hub named "EPD Viewer Hub".

Last update October 2019