The EPD viewer for C. familiaris is made of the tracks given in the table below. Note that when strand is n/a, it means that signal applies to both strands.
UCSC track name | Track description | Track resolution [bp] | Strand | Original dataset | Raw format | Tissue | Stage/Time point | Condition | MGA series name | PMID | |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | All CAGE (+) | 5′ end of CAGE reads | 1 | + | FANTOM5 | BAM | all tissues merged | n/a | n/a | lizio17 | 29182598 |
track subset: Selected FANTOM CAGE samples | |||||||||||
2 | (+) MesenchymalStemCells | 5′ end of CAGE reads | 1 | + | FANTOM5 | BAM | mesenchymal stem cells | n/a | n/a | lizio17 | 29182598 |
3 | (+) Hepatocytes | 5′ end of CAGE reads | 1 | + | FANTOM5 | BAM | hepatocytes | n/a | n/a | lizio17 | 29182598 |
4 | (+) AorticSmoothMusc | 5′ end of CAGE reads | 1 | + | FANTOM5 | BAM | aortic smooth muscle cells | n/a | undifferentiated | lizio17 | 29182598 |
5 | (+) AorticSmoothMuscDiff | 5′ end of CAGE reads | 1 | + | FANTOM5 | BAM | aortic smooth muscle cells | n/a | differentiated | lizio17 | 29182598 |
6 | (-) MesenchymalStemCells | 5′ end of CAGE reads | 1 | − | FANTOM5 | BAM | mesenchymal stem cells | n/a | n/a | lizio17 | 29182598 |
7 | (-) Hepatocytes | 5′ end of CAGE reads | 1 | − | FANTOM5 | BAM | hepatocytes | n/a | n/a | lizio17 | 29182598 |
8 | (-) AorticSmoothMusc | 5′ end of CAGE reads | 1 | − | FANTOM5 | BAM | aortic smooth muscle cells | n/a | undifferentiated | lizio17 | 29182598 |
9 | (-) AorticSmoothMuscDiff | 5′ end of CAGE reads | 1 | − | FANTOM5 | BAM | aortic smooth muscle cells | n/a | differentiated | lizio17 | 29182598 |
10 | All CAGE (-) | 5′ end of CAGE reads | 1 | − | FANTOM5 | BAM | all tissues merged | n/a | n/a | lizio17 | 29182598 |
11 | EPDnew promoters | EPDnew promoters v. 001 | 1a | n/ab | n/a | n/a | n/a | n/a | n/a | epd | 23193273 |
These tracks are available at UCSC as a public hub named "EPD Viewer Hub".