ChIP-Seq:The ChIP-Seq Web Server provides access to a set of useful tools performing common ChIP-Seq data analysis tasks, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. Users can analyse their own data by uploading mapped sequence tags in various formats, including BED and BAM. The server also provides access to hundreds of publicly available data sets such as ChIP-seq data, RNA-seq data (i.e. CAGE), DNA-methylation data, sequence annotations (promoters, polyA-sites, etc.), and sequence-derived features (CpG, phastCons scores).
MADAP:Clustering tool for the interpretation of one-dimensional genome annotation data
SSA:The Signal Search Analysis Server
TagScan:Fast sequence tag mapping
TROMER Database:Transcriptome analyser documenting all transcribed elements
CleanEx:A database which provides access to public gene expression data via unique approved gene symbols.
myHITS:A database and web tools devoted to protein domains
Last update Dec. 2016