cap signal base frequency table and weigth matrix

(from Bucher 1990, J. Mol. Biol. 212, 563-578, Table 4)

 
 
-3 -2 -1 0 1 2 3 4 5
# A 49 0 288 26 77 67 45 50
# C 48 303 0 81 95 118 85 96
# G 69 0 0 116 0 46 73 56
# T 137 0 15 80 131 72 100 101
W(A) -1.14 -5.26 0.00 -1.51 -0.65 -0.55 -0.91 -0.82
W(C) -1.16 0.00 -5.21 -0.41 -0.45 0.00 -0.29 -0.18
W(G) -0.75 -5.26 -5.21 0.00 -4.56 -0.86 -0.38 -0.65
W(T) 0.00 -5.26 -2.74 -0.29 0.00 -0.36 0.00 0.00
Consensus t/g C A/t g/t/c T/c/a c/t t/c/g t/c
Preferred region: Position 0 between 1 and +5 relative to transcription start site.
Optimizid cut-off value: -3.75 (81.4%)

Last update May 2017