Due to maintenance activity, EPD Website might not be fully operational. Please contact us in case of bugs.

cap signal base frequency table and weigth matrix

(from Bucher 1990, J. Mol. Biol. 212, 563-578, Table 4)

 
 
-3 -2 -1 0 1 2 3 4 5
# A 49 0 288 26 77 67 45 50
# C 48 303 0 81 95 118 85 96
# G 69 0 0 116 0 46 73 56
# T 137 0 15 80 131 72 100 101
W(A) -1.14 -5.26 0.00 -1.51 -0.65 -0.55 -0.91 -0.82
W(C) -1.16 0.00 -5.21 -0.41 -0.45 0.00 -0.29 -0.18
W(G) -0.75 -5.26 -5.21 0.00 -4.56 -0.86 -0.38 -0.65
W(T) 0.00 -5.26 -2.74 -0.29 0.00 -0.36 0.00 0.00
Consensus t/g C A/t g/t/c T/c/a c/t t/c/g t/c
Preferred region: Position 0 between 1 and +5 relative to transcription start site.
Optimizid cut-off value: -3.75 (81.4%)

Last update May 2017