Inr-DPE motif logo:

Inr-DPE motif logo

Inr-DPE weigth matrix

Position -02 -01 00 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 A C G T -2.11 -2.18 -2.03 0.00 -4.12 0.00 -3.80 -1.63 0.00 -4.46 -4.57 -4.37 -3.03 -3.32 0.00 -2.41 -2.35 -4.24 -4.16 0.00 -1.16 -0.35 -1.71 0.00 -0.75 -0.60 0.00 -0.39 -0.11 -0.13 0.00 -0.36 0.00 -0.17 -0.40 -0.06 0.00 -0.46 -0.50 -0.06 -0.41 -1.20 -0.64 0.00 -0.76 -0.33 -0.98 0.00 -0.55 0.00 -0.20 -0.29 0.00 -1.46 -0.05 -1.23 0.00 -1.27 -0.17 -1.09 -0.10 0.00 -1.21 -0.83 -0.38 0.00 -0.61 -0.34 -0.94 -0.49 0.00 -0.31 -2.31 -0.61 -1.59 0.00 -1.74 0.00 -0.82 -0.99 -0.55 -0.97 0.00 -1.76 0.00 -0.95 -1.07 -0.75 0.00 -0.08 -0.21 -0.65 -0.92 -0.16 0.00 -1.27 -0.30 0.00 -0.05 -0.72 -0.65 -1.42 0.00 -1.77 0.00 -1.31 -0.51 -0.27 0.00 -0.69 -0.07 -0.32 -0.51 0.00 -2.17 -1.26 -0.38 -2.56 0.00 -2.16 -2.10 -0.99 0.00 -2.52 0.00 -2.67 -2.05 -0.43


Reference position: 0 (third in the matrix)

Optimizid cut-off value: -17.69 (67.00%)

Expected location: at the TSS

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Last update May 2017