GC-box base frequency table and weigth matrix

(from Bucher 1990, J. Mol. Biol. 212, 563-578, Table 6)
Position -6 -5 -4 -3 -2 -1 0 1 2 3 4 5 6 7
# A 102 97 50 67 0 2 54 46 1 79 23 0 20 40
# C 40 31 6 1 0 0 170 1 3 0 17 166 86 24
# G 50 112 154 206 274 272 0 224 222 171 192 35 52 109
# T 82 34 64 0 0 0 50 3 48 24 42 73 116 101
W(A) 0.00 0.00 -0.52 -0.39 -4.07 -3.42 -1.05 -1.09 -3.57 -0.03 -1.35 -3.98 -1.56 -0.72
W(C) -0.95 -1.12 -2.26 -3.25 -3.80 -4.23 0.00 -3.67 -3.05 -3.52 -1.90 0.00 -0.42 -1.45
W(G) -1.16 -0.38 0.00 0.00 0.00 0.00 -4.58 0.00 0.00 0.00 0.00 -1.83 -1.09 -0.27
W(T) -0.10 -1.00 -0.15 -3.75 -3.93 -4.02 -0.98 -3.34 -0.69 -1.14 -0.83 -0.56 0.00 0.00
Consensus a/t a/g g/t/a G/a G G C/t/a G/a G/t g/a/t g/t c/t t/c t/g
Preferred region: Position 0 between -164 and +1 relative to transcription start site. Optimizid cut-off value: -4.90 (88.0%)
Last update Dec. 2016